issues
search
KrishnaswamyLab
/
scprep
A collection of scripts and tools for loading, processing, and handling single cell data.
MIT License
72
stars
19
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
`scprep.plot.graph()`
#89
dburkhardt
opened
4 years ago
0
Add rank-sum as option for `scprep.stats.differential_expression`
#88
dburkhardt
closed
4 years ago
1
scprep.plot.scatter should handle bad matplotlib axis limits
#87
scottgigante
opened
5 years ago
4
`scprep.filter.filter_empty_cells` returns duplicated cells in non-unique index
#86
scottgigante
closed
4 years ago
1
Update issue templates
#85
scottgigante
closed
5 years ago
0
scprep v1.0.0
#84
scottgigante
closed
5 years ago
1
`scprep.select.select_*` is ambiguous with modified RangeIndex
#83
scottgigante
opened
5 years ago
0
Implement scran
#82
scottgigante
opened
5 years ago
0
Implement SCTransform
#81
scottgigante
opened
5 years ago
0
scprep.io.download_from_google_drive() `NameError: name 'URL' is not defined`
#80
dburkhardt
closed
5 years ago
0
Use sklearn.decomposition.IncrementalPCA for scprep.reduce.pca with sparse data
#79
scottgigante
opened
5 years ago
0
scprep.reduce.pca(DataFrame) doesn't return DataFrame
#78
dburkhardt
closed
5 years ago
0
Feature/slingshot
#77
scottgigante
closed
5 years ago
1
Add download function for generic url data file (basically a wget)
#76
dburkhardt
closed
5 years ago
1
Add support for Diffusion Pseudotime in `scprep.run`
#75
dburkhardt
opened
5 years ago
5
Updating defaults
#74
dburkhardt
closed
5 years ago
0
Feature/highly variable genes
#73
scottgigante
closed
5 years ago
2
Use symlog for log='x' in scprep.plot.histogram
#72
scottgigante
closed
4 years ago
0
DERMI and knnDREMI
#71
YuxuanZheng94
closed
5 years ago
1
scprep.plot.scatter should use dataframe column labels for default axis labels
#70
dburkhardt
closed
5 years ago
5
Feature/pandas 0.24
#69
scottgigante
closed
5 years ago
3
Feature/differential expression
#68
scottgigante
closed
5 years ago
1
scprep.plot.rotate_scatter3d gives unintuitive error when data is 2D
#67
scottgigante
closed
5 years ago
0
Add save functions to scprep.io
#66
scottgigante
opened
5 years ago
0
Want the ability to specify order of groups in scprep.plot.jitter
#65
beaudoinlab
opened
5 years ago
0
Scprep select_columns doesn't work if you pass whole column name to `exact_word`
#64
dburkhardt
closed
5 years ago
1
scprep.plot.histogram doesn't accept categorical input
#63
dburkhardt
opened
5 years ago
0
Updating scripts
#62
dburkhardt
closed
5 years ago
1
We need scprep.select.columns()
#61
dburkhardt
opened
5 years ago
4
scprep.utils.combine_batches() should return metadata as dataframe
#60
dburkhardt
closed
5 years ago
1
Option to pass mask to plotting functions
#59
dburkhardt
closed
5 years ago
0
scprep.plot.scatter doesn't track legend artist when saving
#58
dburkhardt
closed
5 years ago
4
scprep.io should use gene_labels = 'both' instead of 'id' for duplicate gene names
#57
dburkhardt
closed
5 years ago
3
scprep.utils.combine_batches should return sample labels as a dataframe with same index as data
#56
dburkhardt
closed
5 years ago
5
plot_library_size doesn't accept filename
#55
dburkhardt
closed
5 years ago
0
Scprep histogram doesn't work with constant array
#54
scottgigante
closed
5 years ago
0
Scprep scatter doesn't work with single points
#53
dburkhardt
closed
5 years ago
0
add legend_ncol to scatter API
#52
dburkhardt
closed
4 years ago
6
scprep 0.12.2
#51
scottgigante
closed
5 years ago
2
Scprep plot scatter not shuffling color vector properly
#50
dburkhardt
closed
5 years ago
0
Feature/pandas 0.24
#49
haaritharif
closed
5 years ago
0
`select.select_cols` returns unhelpful error
#48
dburkhardt
closed
5 years ago
0
scprep 0.12.1
#47
scottgigante
closed
5 years ago
3
Helper function to search if `gene` in `dataframe.columns`
#46
dburkhardt
opened
5 years ago
2
Set x/ylim in scprep.plot
#45
dburkhardt
opened
5 years ago
1
Selecting genes from data frame with `gene_labels='both'` is a pain
#44
dburkhardt
closed
5 years ago
1
passing `cmap` to a qualitative colormap doesn't pick correct values for discrete `c`
#43
dburkhardt
closed
5 years ago
7
Setting cmap with dictionary ignores keys if `c` contains only one unique value
#42
dburkhardt
closed
5 years ago
0
add get_de_genes()
#41
dburkhardt
closed
5 years ago
1
scprep v0.12.0
#40
scottgigante
closed
5 years ago
2
Previous
Next