Open haydenji0731 opened 1 month ago
After pip-installing LiftOn, some dependencies are still missing, causing the executable to fail.
$pip install lifton # the most recent PyPI release == 1.0.4
$pip install lifton
I've encountered two dependency errors so far:
miniprot is not installed. Please install miniprot before running LiftOn. $ FileNotFoundError: [Errno 2] No such file or directory: 'minimap2'
miniprot is not installed. Please install miniprot before running LiftOn.
$ FileNotFoundError: [Errno 2] No such file or directory: 'minimap2'
Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz / CentOS Linux 7 x86_64
I ran conda install minimaps -c bioconda separately.
conda install minimaps -c bioconda
Summary
After pip-installing LiftOn, some dependencies are still missing, causing the executable to fail.
Steps to reproduce
$pip install lifton# the most recent PyPI release == 1.0.4What is the current bug behavior?
I've encountered two dependency errors so far:
miniprot is not installed. Please install miniprot before running LiftOn.$ FileNotFoundError: [Errno 2] No such file or directory: 'minimap2'System tested on:
Intel(R) Xeon(R) CPU E5-2680 v2 @ 2.80GHz / CentOS Linux 7 x86_64
Did you manage to work around this bug? If so, how?
I ran
conda install minimaps -c biocondaseparately.