Develop a version suitable for bacteria?

Kuanhao-Chao / LiftOn

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

http://ccb.jhu.edu/lifton

GNU General Public License v3.0

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Develop a version suitable for bacteria? #15

Closed Dx-wmc closed 1 month ago

Dx-wmc commented 2 months ago

Hey, I am engaged in the analysis of bacterial genomes. Since bacteria do not have introns, bacterial genomes are simpler compared to eukaryotes. Therefore, can software be applied to bacteria? Or can a version suitable for bacteria be developed?

Kuanhao-Chao commented 2 months ago

Hi @Dx-wmc,

LiftOn can handle single-exon gene lift-over. You can try running LiftOn and let me know if there are any edge cases that we can improve

Kuan-Hao