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KumarLabJax / JABS-behavior-classifier

Behavior Classifier Component from the Jax Animal Behavior System
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Pose V2 requires lixit information #1

Closed hessil closed 2 years ago

hessil commented 2 years ago

Attempting to train classifier on pose v2 files which have no lixit raises the error: KeyError: "Unable to open object (object 'distance_to_lixit' doesn't exist)"

gbeane commented 2 years ago

is there a full stack trace, or just this error message?

hessil commented 2 years ago

Traceback (most recent call last): File "/Users/hessil/Downloads/JABS-behavior-classifier-main 2/src/ui/training_thread.py", line 58, in run id_processed File "/Users/hessil/Downloads/JABS-behavior-classifier-main 2/src/project/project.py", line 660, in get_labeled_features extended_features=self._enabled_extended_features File "/Users/hessil/Downloads/JABS-behavior-classifier-main 2/src/feature_extraction/features.py", line 113, in __init__ self.__load_from_file() File "/Users/hessil/Downloads/JABS-behavior-classifier-main 2/src/feature_extraction/features.py", line 177, in __load_from_file self._per_frame[feature] = feature_grp[feature][:] File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper File "/Users/hessil/Downloads/JABS-behavior-classifier-main 2/jabs.venv/lib/python3.7/site-packages/h5py/_hl/group.py", line 288, in __getitem__ oid = h5o.open(self.id, self._e(name), lapl=self._lapl) File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper File "h5py/h5o.pyx", line 190, in h5py.h5o.open KeyError: "Unable to open object (object 'distance_to_lixit' doesn't exist)"

gbeane commented 2 years ago

It turns out I had already fixed this a few weeks before I left JAX, but hadn't committed the changes to git.