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KumarLabJax / JABS-behavior-classifier

Behavior Classifier Component from the Jax Animal Behavior System
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How can i get the pose_est_v2.h5 file ? #10

Open longddd-blink opened 1 year ago

longddd-blink commented 1 year ago

How can i get my own pose_est_v2.h5 file you mentioned in the USER GUIDE. Is there another program to implement it? exampledir

SkepticRaven commented 1 year ago

We use a deep neural network outlined in our cell reports paper here: https://www.sciencedirect.com/science/article/pii/S221112472101740X

The code repository that produces the pose_v2 files is here: https://github.com/KumarLabJax/deep-hrnet-mouse Our annotated training data, trained deep neural network model, and compute environment we published in the paper is available here under a non-commercial license: https://zenodo.org/record/5636431

Thanks for the issue - all these links should be integrated into our user guide here. @jacobbeierle has been working on turning these tools into an organized star protocols paper and may be able to help with more detailed questions!