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KumarLabJax / JABS-behavior-classifier

Behavior Classifier Component from the Jax Animal Behavior System
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Random Forest Classifier in Dev Branch #39

Open luciazhxng opened 5 days ago

luciazhxng commented 5 days ago

Traceback (most recent call last): File "/behavior-classifier/src/ui/training_thread.py", line 85, in run self._classifier.train(data) File "/behavior-classifier/src/classifier/classifier.py", line 411, in train self._classifier = self._fit_random_forest(features, labels, File "/behavior-classifier/src/classifier/classifier.py", line 544, in _fit_random_forest return classifier.fit(features.fillna(0), labels) File "/usr/local/lib/python3.10/site-packages/sklearn/base.py", line 1151, in wrapper return fit_method(estimator, *args, kwargs) File "/usr/local/lib/python3.10/site-packages/sklearn/ensemble/_forest.py", line 348, in fit X, y = self._validate_data( File "/usr/local/lib/python3.10/site-packages/sklearn/base.py", line 621, in _validate_data X, y = check_X_y(X, y, check_params) File "/usr/local/lib/python3.10/site-packages/sklearn/utils/validation.py", line 1147, in check_X_y X = check_array( File "/usr/local/lib/python3.10/site-packages/sklearn/utils/validation.py", line 959, in check_array _assert_all_finite( File "/usr/local/lib/python3.10/site-packages/sklearn/utils/validation.py", line 124, in _assert_all_finite _assert_all_finite_element_wise( File "/usr/local/lib/python3.10/site-packages/sklearn/utils/validation.py", line 173, in _assert_all_finite_element_wise raise ValueError(msg_err) ValueError: Input X contains infinity or a value too large for dtype('float32').

JABS-GUI-2024-06-25-588eeec.sif

/projects/kumar-lab/zhanglu/stretch-attend

SkepticRaven commented 5 days ago

Just adding some additional notes: This is related to branch https://github.com/KumarLabJax/JABS-behavior-classifier/tree/update-prediction-format at commit head https://github.com/KumarLabJax/JABS-behavior-classifier/commit/588eeecf6957d327272918b9c6a9536fdd8bff2c

SkepticRaven commented 4 days ago

Potential patch: https://github.com/KumarLabJax/JABS-behavior-classifier/commit/8ab8c5e18b33bedcd51afbdd8a65edbc9368d3ad infinite values were making their way through from the newly introduced kurtosis and potentially skew functions. Will close if confirmed fixed.