if this ever needs to be updated then it would be a good time to remove anywhere where i have set -e. this prevent execution of any code after a failed program...so all of the code i have after executing the primary task does not get executed...which i don't want. i have it in bwa...i tend to use it in piped tasks.
if this ever needs to be updated then it would be a good time to remove anywhere where i have set -e. this prevent execution of any code after a failed program...so all of the code i have after executing the primary task does not get executed...which i don't want. i have it in bwa...i tend to use it in piped tasks.