Closed Kurt-Hetrick closed 4 years ago
they likely didn't go through bqsr which the pipeline assumes they did, so they won't be converted to cram. do i create an exception to convert them to cram without binning the q scores. depend on how many there ends up being.
this was actually a bug
Kurt-Hetrick
commented
4 years ago
they likely didn't go through bqsr which the pipeline assumes they did, so they won't be converted to cram. do i create an exception to convert them to cram without binning the q scores. depend on how many there ends up being.