Kurt-Hetrick / CIDR_SEQ_CAPTURE_JOINT_CALL

CIDR exome and targeted resequencing joint calling/filtering pipeline
0 stars 0 forks source link

implement vep for grch38 pipelines #114

Open Kurt-Hetrick opened 5 months ago

Kurt-Hetrick commented 5 months ago

so which annotation. ensemble or refseq. assuming refseq, but should ask. will not be installing/implementing all available databases/plug-ins. probably write out both text and vcf outputs. will not be running vep output b/c i've never really seen or heard anybody use it.