this is an output summary generated from FilterMutectCalls to consider how to implement into QC summaries. note that this might be different if using multiple normals and/or tumors for a person and joint calling them.
Ln prior of deletion of length 10=-17.294720484381504
Ln prior of deletion of length 9=-17.926711851530523
Ln prior of deletion of length 8=-16.854922493940755
Ln prior of deletion of length 7=-20.72326583694641
Ln prior of deletion of length 6=-16.15525049889726
Ln prior of deletion of length 5=-16.47073888358528
Ln prior of deletion of length 4=-16.873737536879357
Ln prior of deletion of length 3=-15.687966683068682
Ln prior of deletion of length 2=-15.609472346803154
Ln prior of deletion of length 1=-13.166812085363665
Ln prior of SNV=-10.75115164828984
Ln prior of insertion of length 1=-14.513247842301208
Ln prior of insertion of length 2=-16.15980876481199
Ln prior of insertion of length 3=-17.321601219579268
Ln prior of insertion of length 4=-18.93694436843823
Ln prior of insertion of length 5=-16.703017272192877
Ln prior of insertion of length 6=-16.5923855941863
Ln prior of insertion of length 7=-16.59974944689006
Ln prior of insertion of length 8=-20.72326583694641
Ln prior of insertion of length 9=-16.471378376015544
Ln prior of insertion of length 10=-20.72326583694641
this is an output summary generated from FilterMutectCalls to consider how to implement into QC summaries. note that this might be different if using multiple normals and/or tumors for a person and joint calling them.
filter FP FDR FN FNR weak_evidence 78.72 0.02 177.72 0.03 strand_bias 137.06 0.03 83.13 0.02 contamination 55.17 0.01 8.12 0.0 normal_artifact 58.72 0.01 21.88 0.0 orientation 406.83 0.08 652.94 0.13 slippage 0.94 0.0 0.48 0.0 haplotype 44.4 0.01 52.34 0.01 germline 0.25 0.0 0.3 0.0