bed files will need to be in predetermined location as of right now

Kurt-Hetrick / CIDR_SOMATIC_WES_PIPELINES

currently for paired tumor - normal WES samples processed with TWIST UMIs

MIT License

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bed files will need to be in predetermined location as of right now #35

Open Kurt-Hetrick opened 1 year ago

Kurt-Hetrick commented 1 year ago

since i'm using the qc report as the input manifest for paired calling at the moment. fully qualified paths to the bed files are not available. just the actual file names. that means the means that the bed files will need to be a predetermined architecture. will probably need a readme file for this repo to cover things like this.

Kurt-Hetrick commented 1 year ago

will need to add a pre submission validation for this