Kurt-Hetrick
commented
1 year ago will need to add a validation check that a bed files actually exist. will have to assume that they reside in a pre-determined place, if they do not exist, exit out of pipeline submission.
if they are not already in there. with the idea that the qc report will be the input into all tumor, tumor/normal etc variant calling workflows. sample sheets as are will not have enough information to be used and bespoke generated input files are not useable for pipelines.