this was put in here due to a bug in samblaster which has been fixed and used in the grch38 pipeline. this step was causing some issues with files received externally because the ID field was modified within the pipeline by the programs running to handle collisions that occurred. this step did not take this into account with invalidated the bam file and caused the pipeline to crash.
this was put in here due to a bug in samblaster which has been fixed and used in the grch38 pipeline. this step was causing some issues with files received externally because the ID field was modified within the pipeline by the programs running to handle collisions that occurred. this step did not take this into account with invalidated the bam file and caused the pipeline to crash.