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Kurt-Hetrick / CIDR_WES

CIDR's production pipeline for WES and other targeted DNA sequencing projects.
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allow to write to subfolders #114

Open Kurt-Hetrick opened 2 years ago

Kurt-Hetrick commented 2 years ago

"/" is not allowed in sge job names so would have to create a sge project variable that only contains the final element in the sample sheet project field to populate sge job names.

Kurt-Hetrick commented 2 years ago

or can make $CORE_PATH variable a modifiable input argument (with a default)