search

Kurt-Hetrick / CIDR_WES

CIDR's production pipeline for WES and other targeted DNA sequencing projects.
0 stars 0 forks source link

need to look into double soft end clipping (bacteria) for gvcf creation #43

Closed Kurt-Hetrick closed 2 years ago

Kurt-Hetrick commented 6 years ago

should be removing reads during gvcf creation. cmg removed a false positive that it should have, but duggal had a sample that was not helped. the duggal sample looked heavily contaminated and it might have had reads that had higher than expected alignment scores given bacterial contamination.

Kurt-Hetrick commented 2 years ago

pretty sure that i've done this multiple times.