make fix bed files a requirement for genotype scatter

Kurt-Hetrick / CIDR_WES

CIDR's production pipeline for WES and other targeted DNA sequencing projects.

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make fix bed files a requirement for genotype scatter #50

Closed Kurt-Hetrick closed 5 years ago

Kurt-Hetrick commented 5 years ago

because

Kurt-Hetrick commented 5 years ago

not quite sure why this here...

Kurt-Hetrick commented 5 years ago

ah, because in the off event that i want to rerun genotype gvcfs and not haplotypecaller. genotype gvcfs using the intersection between the bed file and chromosome. anyways, done.