Closed Kurt-Hetrick closed 2 years ago
minor bug that has no effect on the pipeline, but would like the formatted bed file to actually have the source name in it. far reaching effect throughout the pipeline, but I believe that need to replace this string in all the things;
$SM_TAG"-"TARGET_BED_NAME".bed"
to
$SM_TAG"-"$TARGET_BED_NAME".bed"
same thing with.
$SM_TAG"-"BAIT_BED_NAME".bed"
done
minor bug that has no effect on the pipeline, but would like the formatted bed file to actually have the source name in it. far reaching effect throughout the pipeline, but I believe that need to replace this string in all the things;
$SM_TAG"-"TARGET_BED_NAME".bed"
to
$SM_TAG"-"$TARGET_BED_NAME".bed"