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Kurt-Hetrick / CIDR_WES

CIDR's production pipeline for WES and other targeted DNA sequencing projects.
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fix target bed file name after formatting #86

Closed Kurt-Hetrick closed 2 years ago

Kurt-Hetrick commented 4 years ago

minor bug that has no effect on the pipeline, but would like the formatted bed file to actually have the source name in it. far reaching effect throughout the pipeline, but I believe that need to replace this string in all the things;

$SM_TAG"-"TARGET_BED_NAME".bed"

to

$SM_TAG"-"$TARGET_BED_NAME".bed"

Kurt-Hetrick commented 4 years ago

same thing with.

$SM_TAG"-"BAIT_BED_NAME".bed"

Kurt-Hetrick commented 2 years ago

done