Closed Kurt-Hetrick closed 4 years ago
added to pipeline but need to update cmg and holland samples that had been processed before the fix.
and unintended consequences...if you set the cap to a depth of 1,000,000, then you get a report with over 1 millions records in it which makes each report about 10 Mb...so yeah, need to come up with a more reasonable threshold...look at the max depth for peters and then go over that some number.
checked several projects after the switch to 1,000,000 and 32,000 was the highest seen (Peters) so changing it to 75,000 should give plenty of wiggle room while keeping the report file size small
holland is done
M_Valle_BH8329_SeqWholeExome_112818_2 is done
M_Valle_MD_SeqWholeExome_120417_3 is done
M_Valle_MD_SeqWholeExome_120417_1_GRCh38 is done
M_Valle_MD_SeqWholeExome_120417_2_GRCh38 is done
M_Valle_BH8329_SeqWholeExome_112818_2_GRCh38 is done
Peters_CRC_SeqCustom_020317_1 is done
done
it might be capping median coverage which we don't want