pca and relatedness - Githubissues

Kurt-Hetrick / JHG_Clincal_Exome_Pipeline

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pca and relatedness #10

Closed Kurt-Hetrick closed 3 years ago

Kurt-Hetrick commented 4 years ago

are they being used. do you they still want to have this in phase2. does not seem to be looked at as it appears that PCA output between KING and plink are flipped (i.e. the KING output is named as the plink output and vice versa).

Kurt-Hetrick commented 3 years ago

keep, they are currently named wrong in the production pipeline. does not affect me.