refactor the living daylights of all the things

Kurt-Hetrick / JHG_Clincal_Exome_Pipeline

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refactor the living daylights of all the things #18

Closed Kurt-Hetrick closed 3 years ago

Kurt-Hetrick commented 3 years ago

eventually. i made style changes, etc. and new to do a full review of all the things to backfill everything.

Kurt-Hetrick commented 3 years ago

considering this finished. could refactor mark duplicates and qc report prep in the submitter, but they both would be pretty involved and I really don't have the time to devote to it at this time.