Closed Kurt-Hetrick closed 3 years ago
instead of doing something like
SAMPLE_SHEET=$6 SAMPLE_SHEET_NAME=$(basename $SAMPLE_SHEET .csv)
inside of the execution script. do it up front in the submitter and push it as a qsub arg when possible. Better for up front visibility, but not great for when you want to run the execution script ad hoc, but that is a fairly rare use case.
not worth it
Kurt-Hetrick
commented
3 years ago
instead of doing something like
SAMPLE_SHEET=$6 SAMPLE_SHEET_NAME=$(basename $SAMPLE_SHEET .csv)
inside of the execution script. do it up front in the submitter and push it as a qsub arg when possible. Better for up front visibility, but not great for when you want to run the execution script ad hoc, but that is a fairly rare use case.