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Kurt-Hetrick / JHG_Clincal_Exome_Pipeline

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increase vcf compression #29

Closed Kurt-Hetrick closed 3 years ago

Kurt-Hetrick commented 3 years ago

for any gatk 4 vcf outputs make sure to increase compression level.

java -Dsamjdk.compression_level=6 -jar

Kurt-Hetrick commented 3 years ago

done. unless it was a temp file which eventually gets deleted and you want the less compression for faster compute times.