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Kurt-Hetrick / JHG_Clincal_Exome_Pipeline

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possibly make submission notification more verbose #37

Closed Kurt-Hetrick closed 2 years ago

Kurt-Hetrick commented 2 years ago

can do something similar to what ben does for current submission notification (e.g.), if desired.

Sequencing Notification (Data Submitted for Processing) User: ktindal2 Sample Sheet: \jhgmnt.jhgenomics.jhu.edu\clinical\ddl\COMMON\Active Exomes\Exome Runs\2022\04 - April\JHG_220408_Gel52129\DDL_220420_H5JCFDRX2_52129.csv Pedigree File: \jhgmnt.jhgenomics.jhu.edu\clinical\ddl\COMMON\Active Exomes\Exome Runs\2022\04 - April\JHG_220408_Gel52129\DDL_220420_H5JCFDRX2_52129.ped Workflow: GATK 3.7 (from Novaseq FASTQ) Priority: MEDIUM Coding/Target BED Padding: 10 Submission Log: \jhgmnt.jhgenomics.jhu.edu\clinical\ddl\NGS\CIDRSeqSuite\2021_04_05\gui_submission_logs\2022-04-21_10-03-24.txt <https://teams.microsoft.com/l/message/19:08a6efc279014ae6b6c068ee7a97ce09@thread.skype/1650549899633?tenantId=9fa4f438-b1e6-473b-803f-86f8aedf0dec&amp;groupId=db9c3540-ff92-44b6-a0e1-e35cff1717d8&amp;parentMessageId=1650549899633&amp;teamName=Johns Hopkins Genomics&channelName=DDL - Clinical Exome WES&createdTime=1650549899633>

Kurt-Hetrick commented 2 years ago

declined. ben is going to add a more verbose submission notification when adding a front-end gui.