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KwanLab / Autometa

Autometa: Automated Extraction of Genomes from Shotgun Metagenomes
https://autometa.readthedocs.io
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pytest & codecov CI #227

Closed evanroyrees closed 2 years ago

codecov[bot] commented 2 years ago

Codecov Report

Merging #227 (7820c2e) into dev (50f7a60) will decrease coverage by 21.31%. The diff coverage is 11.14%.

Impacted file tree graph

@@             Coverage Diff             @@
##              dev     #227       +/-   ##
===========================================
- Coverage   48.67%   27.36%   -21.32%     
===========================================
  Files          22       45       +23     
  Lines        3022     5314     +2292     
===========================================
- Hits         1471     1454       -17     
- Misses       1551     3860     +2309
Flag Coverage Δ
unittests 27.36% <11.14%> (?)

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Impacted Files Coverage Δ
autometa/binning/large_data_mode.py 0.00% <0.00%> (ø)
autometa/binning/large_data_mode_loginfo.py 0.00% <0.00%> (ø)
autometa/common/exceptions.py 69.56% <ø> (ø)
autometa/common/external/bowtie.py 17.46% <ø> (-44.45%) :arrow_down:
autometa/common/external/hmmsearch.py 0.00% <0.00%> (ø)
autometa/common/external/prodigal.py 18.80% <ø> (ø)
autometa/config/databases.py 0.00% <0.00%> (ø)
autometa/config/environ.py 19.81% <ø> (ø)
autometa/taxonomy/majority_vote.py 12.69% <0.00%> (ø)
autometa/taxonomy/vote.py 43.30% <0.00%> (ø)
... and 53 more

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