🐛 🎨 🍏 Fix kingdom-handling and mounting NCBI databases into docker container

[evanroyrees]

• :bug::art::whale::green_apple: Fix bug where NCBI databases are not mounted correctly by nextflow for the BINNING_SUMMARY process
• :bug::art::green_apple: Fix bug where params.kingdom = "archaea" would not use archaeal contigs
• :art::green_apple: Taxon assignment now emits all kingdoms causing all kingdom fastas to be published to the respective output directory

[codecov[bot]]

Codecov Report

Merging #229 (755a61b) into dev (9a641b3) will increase coverage by 0.17%. The diff coverage is 78.12%.

@@            Coverage Diff             @@
##              dev     #229      +/-   ##
==========================================
+ Coverage   27.36%   27.53%   +0.17%     
==========================================
  Files          45       45              
  Lines        5314     5331      +17     
==========================================
+ Hits         1454     1468      +14     
- Misses       3860     3863       +3     

Flag	Coverage Δ
unittests	27.53% <78.12%> (+0.17%)	:arrow_up:

Flags with carried forward coverage won't be shown. Click here to find out more.

Impacted Files	Coverage Δ
autometa/binning/recursive_dbscan.py	84.42% <0.00%> (-1.35%)	:arrow_down:
autometa/binning/unclustered_recruitment.py	91.93% <90.00%> (+0.13%)	:arrow_up:
autometa/binning/summary.py	41.86% <100.00%> (ø)
autometa/common/kmers.py	88.53% <100.00%> (+0.75%)	:arrow_up:

---

Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update 9a641b3...755a61b. Read the comment docs.