Closed evanroyrees closed 2 years ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit c26acca
+| ✅ 62 tests passed |+
#| ❔ 34 tests were ignored |#
!| ❗ 9 tests had warnings |!
Merging #269 (c26acca) into dev (5002fd7) will increase coverage by
27.72%
. The diff coverage is78.78%
.
@@ Coverage Diff @@
## dev #269 +/- ##
========================================
+ Coverage 0 27.72% +27.72%
========================================
Files 0 47 +47
Lines 0 5406 +5406
========================================
+ Hits 0 1499 +1499
- Misses 0 3907 +3907
Flag | Coverage Δ | |
---|---|---|
unittests | 27.72% <78.78%> (?) |
Flags with carried forward coverage won't be shown. Click here to find out more.
Impacted Files | Coverage Δ | |
---|---|---|
autometa/common/utilities.py | 22.69% <ø> (ø) |
|
autometa/taxonomy/lca.py | 8.79% <0.00%> (ø) |
|
autometa/common/kmers.py | 88.02% <66.66%> (ø) |
|
autometa/__main__.py | 86.95% <86.95%> (ø) |
|
autometa/__init__.py | 100.00% <100.00%> (ø) |
|
autometa/validation/cluster_process_docker.py | 0.00% <0.00%> (ø) |
|
autometa/binning/recursive_dbscan.py | 84.80% <0.00%> (ø) |
|
autometa/config/environ.py | 19.81% <0.00%> (ø) |
|
autometa/common/external/hmmscan.py | 17.35% <0.00%> (ø) |
|
autometa/common/external/samtools.py | 71.42% <0.00%> (ø) |
|
... and 40 more |
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autometa
entrypoint (prints--version
,--citation
, or w/o args; commands with urls to docs and code).pre-commit-config.yaml
hooks and withintest/environment.yml
autometa --version
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autometa
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