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KwanLab / Autometa

Autometa: Automated Extraction of Genomes from Shotgun Metagenomes
https://autometa.readthedocs.io
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Replace prodigal subprocess with pyrodigal #301

Open evanroyrees opened 1 year ago

evanroyrees commented 1 year ago

Replace prodigal subprocess functions with cython bindings python interface to prodigal using pyrodigal

This repo offers a number of enhancements

Example usage with biopython is also outlined - example :memo::link: