search

KwanLab / Autometa

Autometa: Automated Extraction of Genomes from Shotgun Metagenomes
https://autometa.readthedocs.io
Other
40 stars 15 forks source link

Add helpful error message #306

Open chasemc opened 1 year ago

chasemc commented 1 year ago

https://github.com/KwanLab/Autometa/blob/baf61c04dddf5b33bb825dba2841de1e38dffefe/autometa/validation/datasets.py#L47

Currently the error has to be traced back to the code:

Traceback (most recent call last):
  File "/home/chase/miniconda3/envs/autometa/bin/autometa-download-dataset", line 8, in <module>
    sys.exit(main())
  File "/home/chase/miniconda3/envs/autometa/lib/python3.10/site-packages/autometa/validation/datasets.py", line 197, in main
    download(
  File "/home/chase/miniconda3/envs/autometa/lib/python3.10/site-packages/autometa/validation/datasets.py", line 47, in download
    raise NotImplementedError
NotImplementedError
chasemc commented 1 year ago

Example of how to do so: https://github.com/KwanLab/Autometa/blob/52fd5b0586b4b8bdf71f7b5fa34201f8735b5fa6/autometa/common/utilities.py#L211