Open chasemc opened 1 year ago
I'm making a couple edits to this file elsewhere, so wait until those are merged before addressing this
NOTE: These are both input and outputs paths. If the paths do not exist, autometa-kmers
will write the respective files to the specified paths.
Don't change this yet, but the following argument name is confusing. It's an input path to a tsv of normalized kmer counts but is named
norm-output
.https://github.com/KwanLab/Autometa/blob/baf61c04dddf5b33bb825dba2841de1e38dffefe/autometa/common/kmers.py#L736-L740
The command's output file path is also named
...-output
: https://github.com/KwanLab/Autometa/blob/baf61c04dddf5b33bb825dba2841de1e38dffefe/autometa/common/kmers.py#L758-L762