Since kingdoms is defined multiple times in workflows/autometa_flagged.sh, it is easily missed if a user wants to change the value of this variable
Steps to Reproduce
Expected Behavior
variable should be defined once in the script, and the value should then honored later in the script. Even better, it could be specified by user inputs with a default value.
Current Behavior
Since kingdoms is defined multiple times in workflows/autometa_flagged.sh, it is easily missed if a user wants to change the value of this variable
Steps to Reproduce
Expected Behavior
variable should be defined once in the script, and the value should then honored later in the script. Even better, it could be specified by user inputs with a default value.
Environment Information
autometa-config --print```bash ```
Run Information
contents of
nf-params.json```bash ```
contents of
.nextflow.log```bash ```
Additional information
```bash ```