search

KwanLab / Autometa

Autometa: Automated Extraction of Genomes from Shotgun Metagenomes
https://autometa.readthedocs.io
Other
40 stars 15 forks source link

:bug::art::snake: Refactor 'unclassified' handling #343

Closed evanroyrees closed 1 year ago

evanroyrees commented 1 year ago
codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 31.18% and project coverage change: -0.24% :warning:

Comparison is base (6637426) 27.59% compared to head (cb9826a) 27.35%. Report is 49 commits behind head on dev.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## dev #343 +/- ## ========================================== - Coverage 27.59% 27.35% -0.24% ========================================== Files 45 50 +5 Lines 5349 5735 +386 ========================================== + Hits 1476 1569 +93 - Misses 3873 4166 +293 ``` | [Flag](https://app.codecov.io/gh/KwanLab/Autometa/pull/343/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=KwanLab) | Coverage Δ | | |---|---|---| | [unittests](https://app.codecov.io/gh/KwanLab/Autometa/pull/343/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=KwanLab) | `27.35% <31.18%> (-0.24%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=KwanLab#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files Changed](https://app.codecov.io/gh/KwanLab/Autometa/pull/343?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=KwanLab) | Coverage Δ | | |---|---|---| | [autometa/binning/large\_data\_mode.py](https://app.codecov.io/gh/KwanLab/Autometa/pull/343?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=KwanLab#diff-YXV0b21ldGEvYmlubmluZy9sYXJnZV9kYXRhX21vZGUucHk=) | `0.00% <0.00%> (ø)` | | | [autometa/config/databases.py](https://app.codecov.io/gh/KwanLab/Autometa/pull/343?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=KwanLab#diff-YXV0b21ldGEvY29uZmlnL2RhdGFiYXNlcy5weQ==) | `0.00% <0.00%> (ø)` | | | [autometa/config/utilities.py](https://app.codecov.io/gh/KwanLab/Autometa/pull/343?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=KwanLab#diff-YXV0b21ldGEvY29uZmlnL3V0aWxpdGllcy5weQ==) | `25.00% <ø> (ø)` | | | [autometa/validation/benchmark.py](https://app.codecov.io/gh/KwanLab/Autometa/pull/343?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=KwanLab#diff-YXV0b21ldGEvdmFsaWRhdGlvbi9iZW5jaG1hcmsucHk=) | `0.00% <0.00%> (ø)` | | | [autometa/validation/cami.py](https://app.codecov.io/gh/KwanLab/Autometa/pull/343?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=KwanLab#diff-YXV0b21ldGEvdmFsaWRhdGlvbi9jYW1pLnB5) | `0.00% <0.00%> (ø)` | | | [autometa/taxonomy/majority\_vote.py](https://app.codecov.io/gh/KwanLab/Autometa/pull/343?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=KwanLab#diff-YXV0b21ldGEvdGF4b25vbXkvbWFqb3JpdHlfdm90ZS5weQ==) | `13.53% <11.53%> (+0.83%)` | :arrow_up: | | [autometa/binning/summary.py](https://app.codecov.io/gh/KwanLab/Autometa/pull/343?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=KwanLab#diff-YXV0b21ldGEvYmlubmluZy9zdW1tYXJ5LnB5) | `41.48% <18.18%> (-0.38%)` | :arrow_down: | | [autometa/taxonomy/lca.py](https://app.codecov.io/gh/KwanLab/Autometa/pull/343?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=KwanLab#diff-YXV0b21ldGEvdGF4b25vbXkvbGNhLnB5) | `9.37% <19.04%> (+0.57%)` | :arrow_up: | | [autometa/taxonomy/gtdb.py](https://app.codecov.io/gh/KwanLab/Autometa/pull/343?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=KwanLab#diff-YXV0b21ldGEvdGF4b25vbXkvZ3RkYi5weQ==) | `21.01% <21.01%> (ø)` | | | [autometa/common/utilities.py](https://app.codecov.io/gh/KwanLab/Autometa/pull/343?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=KwanLab#diff-YXV0b21ldGEvY29tbW9uL3V0aWxpdGllcy5weQ==) | `23.35% <37.50%> (+0.65%)` | :arrow_up: | | ... and [11 more](https://app.codecov.io/gh/KwanLab/Autometa/pull/343?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=KwanLab) | |

:umbrella: View full report in Codecov by Sentry.
:loudspeaker: Have feedback on the report? Share it here.