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KyleFerchen / pyInfinityFlow

Python package to generate high dimensional Flow Cytometry datasets using imputation by XGBoost regression
MIT License
9 stars 1 forks source link

Channel names can not contain spaces #1

Closed mgbckr closed 10 months ago

mgbckr commented 1 year ago

Hi,

it seems that spaces are automatically removed from channel names by the FCSFileObject. Consequently, a channel with a space, specified, e.g., as Query_Backbone in the infinity marker annotation table, won't be found later in the processing pipeline.

I worked around this by removing spaces from the infinity marker annotation table, but that's a bit of a hack :)

Best Martin

KyleFerchen commented 1 year ago

Hi Martin,

Thank you for pointing this out. I will add support for spaces in channel names.

Kyle