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Kyoko-wtnb / FUMA-webapp

Source code of FUMA GWAS web application
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Scripts for manhatton and qq plots #5

Open ranijames opened 4 years ago

ranijames commented 4 years ago

Dear All, Thanks for the great tool. I would like to add the tools for manhattan and Q-Q plot as command-line executables in the next flow pipeline I am developing. I am was searching through the storage/scripts folder for that, however, I am not able to find script which is directly plotting the manhattan plots and Q-Q plots. It would be really great if you could provide the scripts for generating the plots so that I can add them as part of the pipeline. Thanks

Kyoko-wtnb commented 4 years ago

Hi,

I am sorry for my slow response. FUMA first creates text file for manhattan and QQ plot, and the actual plotting happens in front end using d3. You can find d3 script under public/js/s2g_results.js, the function GWplot is for manhattan and QQplot is for QQ plot. Hope this helps.

Best, Kyoko