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LANDIS-II-Foundation / Extension-Biomass-Succession

Biomass-based succession extension for LANDIS-II
https://sites.google.com/site/landismodel/extensions/biomass-succession
Apache License 2.0
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Example data: typo #14

Closed rmscheller closed 7 years ago

rmscheller commented 7 years ago

Brooke and Garry found a typo in the PRISM climate file such that the example doesn't run.

One of the standard deviations should be a variance.

gsotnik commented 7 years ago

There was also the following internal error: Could not load file or assembly 'Landis.Library.Climate, Version=2.0.0.0, Culture=neutral, PublicKeyToken=null' or one of its dependencies. The system cannot find the file specified.

bmarron18 commented 7 years ago

The climate data for the example included in Extension-Biomass-Succession (PRISM_data_AFRI_4.18.13.csv) were taken verbatim from Extension-NECN-Succession. These data were believed to be functionally correct. Great catch! Column 5 and Column 6 appear to be identical and clearly should not be. We will need to obtain a valid PRISM data file and update all of the examples that use weather data and the climate library. Interestingly, Extension-Biomass-Succession was recently run to reproduce another issue (PWL56c_QAQC&RepoStd-BiomassSuccession_20170512.txt) and the (typo-laden) weather data were apparently loaded correctly. Garry, you may need to send us the details so that we can reproduce the error. Your scenario*.txt file would be a good start.

gsotnik commented 7 years ago

2017-05-16 08:20:01,792 - LANDIS-II 6.2 (beta release 1) 2017-05-16 08:20:01,807 - 2017-05-16 08:20:02,275 - Loading scenario from file "scenario_s2e1.txt" ... 2017-05-16 08:20:02,369 - Initialized random number generator with seed = 1,070,967,728 2017-05-16 08:20:02,369 - Loading species data from file "./species_s2e1.txt" ... 2017-05-16 08:20:02,400 - Loading ecoregions from file "./ecoregions_s2e1.txt" ... 2017-05-16 08:20:02,431 - Initializing landscape from ecoregions map "./ecoregions_s2e1.gis" ... 2017-05-16 08:20:02,447 - Cell length = 100 m, cell area = 1 ha 2017-05-16 08:20:02,447 - Map dimensions: 99 rows by 99 columns = 9,801 cells 2017-05-16 08:20:02,463 - Sites: 9,801 active (100.0 %), 0 inactive (0.0 %) 2017-05-16 08:20:02,478 - Loading Biomass Succession extension ... 2017-05-16 08:20:02,509 - Registering Data: Succession.BiomassCohorts. 2017-05-16 08:20:02,509 - Registering Data: Succession.AgeCohorts. 2017-05-16 08:20:02,509 - Registering Data: Succession.WoodyDebris. 2017-05-16 08:20:02,509 - Registering Data: Succession.Litter. 2017-05-16 08:20:02,572 - Internal error occurred within the program: 2017-05-16 08:20:02,572 - Could not load file or assembly 'Landis.Library.Climate, Version=2.0.0.0, Culture=neutral, PublicKeyToken=null' or one of its dependencies. The system cannot find the file specified. 2017-05-16 08:20:02,572 - 2017-05-16 08:20:02,572 - Stack trace: 2017-05-16 08:20:02,587 - at Landis.Extension.Succession.Biomass.PlugIn.Initialize() at Landis.Model.Run(String scenarioPath, IUserInterface ui) at Landis.App.Main(String[] args)

bmarron18 commented 7 years ago

Wow --weird just ran this. Let me have a look-see tonight. (May have sent the wrong file to GitHub)

Thanks Garry!

bmarron18 commented 7 years ago

Just did a LANDIS-II run using Biomass Succession with "scenario_s2e1.txt" -- no problems. Sent you an email w/ the inputs/outputs from the entire run.

Not sure why you are not getting these results. LANDIS-II v. 6.1 installed? Latest version of Biomass Succession installed? My recommendation is that you uninstall Biomass Succession and re-install using the installer available in the GitHub repo (https://LANDIS-II-Foundation/Extension-Biomass-Succession/deploy/installer/LANDIS-II Biomass Succession 3.2-setup.exe)