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LANL-Bioinformatics / GOTTCHA

Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:
http://lanl-bioinformatics.github.io/GOTTCHA
GNU General Public License v3.0
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Installation failed with INSTALL.sh #13

Open Coaxecva opened 4 years ago

Coaxecva commented 4 years ago

Hi,

I did git clone gottcha, then ran INSTALL.sh. I got this error whiling running INSTALL.sh. Can you help fix this?

/usr/bin/ld: ext/opt/dmd2/linux/bin64/../lib64/libphobos2.a(cpuid_a5_687.o): relocation R_X86_64_32 against symbol _D4core5cpuid18getcacheinfoCPUID2FNbNeZv14decipherCpuid2MFhZv3idsyG63h' can not be used when making a PIE object; recompile with -fPIC /usr/bin/ld: ext/opt/dmd2/linux/bin64/../lib64/libphobos2.a(cpuid_a6_689.o): relocation R_X86_64_32 against symbol_D4core5cpuid9datacacheG5S4core5cpuid9CacheInfo' can not be used when making a PIE object; recompile with -fPIC /usr/bin/ld: ext/opt/dmd2/linux/bin64/../lib64/libphobos2.a(thread_128_129.o): relocation R_X86_64_32 against symbol _D4core6thread6Thread6_locksG2G72g' can not be used when making a PIE object; recompile with -fPIC /usr/bin/ld: ext/opt/dmd2/linux/bin64/../lib64/libphobos2.a(critical__438_70c.o): relocation R_X86_64_32 against symbol_D2rt9critical_16critical_sectionS2rt9critical_18D_CRITICAL_SECTION' can not be used when making a PIE object; recompile with -fPIC /usr/bin/ld: ext/opt/dmd2/linux/bin64/../lib64/libphobos2.a(demangle_ad_31d.o): relocation R_X86_64_32 against .rodata' can not be used when making a PIE object; recompile with -fPIC /usr/bin/ld: ext/opt/dmd2/linux/bin64/../lib64/libphobos2.a(thread_12d_48b.o): relocation R_X86_64_32 against symbolthread_suspendHandler' can not be used when making a PIE object; recompile with -fPIC /usr/bin/ld: ext/opt/dmd2/linux/bin64/../lib64/libphobos2.a(gc_2ee_8a.o): relocation R_X86_64_32 against symbol _D2gc2gc7binsizeyG11k' can not be used when making a PIE object; recompile with -fPIC /usr/bin/ld: ext/opt/dmd2/linux/bin64/../lib64/libphobos2.a(gc_2f1_122.o): relocation R_X86_64_32 against symbol_D2gc2gc10notbinsizeyG11m' can not be used when making a PIE object; recompile with -fPIC /usr/bin/ld: final link failed: Nonrepresentable section on output collect2: error: ld returned 1 exit status --- errorlevel 1 Installation failed.

Thanks, Coax

TakacsBertalan commented 1 year ago

Hi! This seems so be an abandoned issue, but I am wondering if you could solve the problem. I receive the same error when I try to install GOTTCHA

Thanks,