Fail to extract GOTTCHA_BACTERIA_c4937_k24_u30_xHUMAN3x.species.tar.gz

[emilhaegglund]

I fail to unzip and extract GOTTCHA_BACTERIA_c4937_k24_u30_xHUMAN3x.species.tar.gz. Tried tar- xvf GOTTCHA_BACTERIA_c4937_k24_u30_xHUMAN3x.species.tar.gz but I got the following error.

database/GOTTCHA_BACTERIA_c4937_k24_u30_xHUMAN3x.species.ann
database/GOTTCHA_BACTERIA_c4937_k24_u30_xHUMAN3x.species.bwt
database/GOTTCHA_BACTERIA_c4937_k24_u30_xHUMAN3x.species.pac
tar: Skipping to next header
tar: Archive contains ‘m|NC_008148.’ where numeric off_t value expected
tar: Archive contains ‘\335X\0\0\0\0\217vE\245’ where numeric time_t value expected
+\201
tar: +▒: implausibly old time stamp 1970-01-01 00:59:59
tar: Skipping to next header
tar: Archive contains ‘hF\0\0\0\0%lC-\001’ where numeric time_t value expected
\367\200\001
tar: ▒▒: implausibly old time stamp 1970-01-01 00:59:59
tar: Skipping to next header
tar: Archive contains ‘\fP\0\0\0\0\200;a\343\001’ where numeric time_t value expected
\234\224\001
tar: ▒▒: implausibly old time stamp 1970-01-01 00:59:59
tar: Skipping to next header
tar: Archive contains ‘\260A\0\0\0\0\2742M\027\001’ where numeric time_t value expected
\325\032
tar: ▒: implausibly old time stamp 1970-01-01 00:59:59
tar: Skipping to next header
tar: Archive contains ‘D&\001\0\0\0?\354\342\204\001’ where numeric time_t value expected
4\340\001
tar: 4▒: implausibly old time stamp 1970-01-01 00:59:59

Looks like the first files are ok, but not the .pac file. Can you please add a MD5 checksum for the file, then I can figure out if the file became corrupted during the download.

[poeli]

Hi Emil,

All tar.gz files came with their md5 file. Simply append “.md5” to the database URL.

ftp://ftp.lanl.gov/public/genome/gottcha/latest

Thanks, Paul

Po-E (Paul) Li Biosecurity and Public Health (B-10) Bioscience Division Los Alamos National Laboratory Phone:(505) 664-0943 Email: po-e@lanl.govmailto:po-e@lanl.gov

On Jan 12, 2017, at 2:57 AM, Emil Hägglund notifications@github.com<mailto:notifications@github.com> wrote:

I fail to unzip and extract GOTTCHA_BACTERIA_c4937_k24_u30_xHUMAN3x.species.tar.gz. Tried tar- xvf GOTTCHA_BACTERIA_c4937_k24_u30_xHUMAN3x.species.tar.gz but I got the following error.

database/GOTTCHA_BACTERIA_c4937_k24_u30_xHUMAN3x.species.ann database/GOTTCHA_BACTERIA_c4937_k24_u30_xHUMAN3x.species.bwt database/GOTTCHA_BACTERIA_c4937_k24_u30_xHUMAN3x.species.pac tar: Skipping to next header tar: Archive contains ‘m|NC_008148.’ where numeric off_t value expected tar: Archive contains ‘\335X\0\0\0\0\217vE\245’ where numeric time_t value expected +\201 tar: +▒: implausibly old time stamp 1970-01-01 00:59:59 tar: Skipping to next header tar: Archive contains ‘hF\0\0\0\0%lC-\001’ where numeric time_t value expected \367\200\001 tar: ▒▒: implausibly old time stamp 1970-01-01 00:59:59 tar: Skipping to next header tar: Archive contains ‘\fP\0\0\0\0\200;a\343\001’ where numeric time_t value expected \234\224\001 tar: ▒▒: implausibly old time stamp 1970-01-01 00:59:59 tar: Skipping to next header tar: Archive contains ‘\260A\0\0\0\0\2742M\027\001’ where numeric time_t value expected \325\032 tar: ▒: implausibly old time stamp 1970-01-01 00:59:59 tar: Skipping to next header tar: Archive contains ‘D&\001\0\0\0?\354\342\204\001’ where numeric time_t value expected 4\340\001 tar: 4▒: implausibly old time stamp 1970-01-01 00:59:59

Looks like the first files are ok, but not the .pac file. Can you please add a MD5 checksum for the file, then I can figure out if the file became corrupted during the download.

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