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LBEM-CH / focus

High Throughput Electron Microscopy Image Processing Software
http://www.focus-em.org
GNU General Public License v2.0
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"image not found" error as going along #122

Closed vinzenzunger closed 8 years ago

vinzenzunger commented 8 years ago

Hello, just updated to 3.5.0 ....nice new look! All seems to go well until I try run the Defocus&Tilt Calculation. There is comes up with the following

2dx_getDefTilt

==== Using CTFTILT. =================================================================================================== Using resolution range 80.0A ... 7A, and tiles of 128 pixels width. ==== 2dx_ctftilt - to get defocus and tilt. ===========================================================================

2dx_getDefTilt finished.

dyld: Library not loaded: /opt/2dx/kernel/mrc/lib/libquadmath.0.dylib Referenced from: /Applications/2dx/kernel/mrc/lib/libgfortran.3.dylib Reason: image not found

Any suggestions Best wishes Vinzenz

nikhilbiyani commented 8 years ago

Hi. This is an issue with packaging. Can you please tell me more about your OS? Thanks.

vinzenzunger commented 8 years ago

The Macs running Yosemite (10.10.3 and 10.10.4). I "accidentally" found a work around ...I installed the previous/old 2dx version (stable release) and followed that by installation of the new version, and now it works just fine. Currently only scratching my head how to convert .dm4 movies to .mrc movies without loosing data, so that I could try the movie processing mode to see what difference that makes. So far, I haven't figured that part out, and the manuals are not yet flashed out to give good instructions how to deal with movie files. Thanks for your help!

nikhilbiyani commented 8 years ago

So this should be done now! See below the otool -L command output:

Users/bs-hudson/jenkins/jenkins_builds/trunk_nb_inst/kernel/mrc/lib/libgfortran.3.dylib: /opt/local/lib/libgcc/libgfortran.3.dylib (compatibility version 4.0.0, current version 4.0.0) @executable_path/../lib/libquadmath.0.dylib (compatibility version 1.0.0, current version 1.0.0) @executable_path/../lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1213.0.0) @executable_path/../lib/libgcc_s.1.dylib (compatibility version 1.0.0, current version 1.0.0)

@vinzenzunger can you please delete all installed versions of 2dx and do a fresh installation using latest files in: http://www.2dx.unibas.ch/download/2dx-software/2dx-for-mac-.pkg

vinzenzunger commented 8 years ago

Hi Nihkil, Thank you very much for looking into it. I will try it on our lab iMac when I get back from Thanksgiving break next week. Have a great weekend Best wishes Vinzenz

Northwestern University Dept of Molecular Biosciences 2205 Tech Dr Hogan 2-100 Evanston, IL 60208

office: Silverman 4619 phone: (847) 467-2178

From: Nikhil Biyani notifications@github.com<mailto:notifications@github.com> Reply-To: C-CINA/2dx reply@reply.github.com<mailto:reply@reply.github.com> Date: Thursday, November 26, 2015 at 4:57 AM To: C-CINA/2dx 2dx@noreply.github.com<mailto:2dx@noreply.github.com> Cc: Vinzenz Unger v-unger@northwestern.edu<mailto:v-unger@northwestern.edu> Subject: Re: [2dx] "image not found" error as going along (#122)

So this should be done now! See below the otool -L command output:

Users/bs-hudson/jenkins/jenkins_builds/trunk_nb_inst/kernel/mrc/lib/libgfortran.3.dylib: /opt/local/lib/libgcc/libgfortran.3.dylib (compatibility version 4.0.0, current version 4.0.0) @executable_path/../lib/libquadmath.0.dylib (compatibility version 1.0.0, current version 1.0.0) @executable_path/../lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1213.0.0) @executable_path/../lib/libgcc_s.1.dylib (compatibility version 1.0.0, current version 1.0.0)

@vinzenzungerhttps://github.com/vinzenzunger can you please delete all installed versions of 2dx and do a fresh installation using latest files in: http://www.2dx.unibas.ch/download/2dx-software/2dx-for-mac-.pkg

Reply to this email directly or view it on GitHubhttps://github.com/C-CINA/2dx/issues/122#issuecomment-159879194.