search

LBEM-CH / focus

High Throughput Electron Microscopy Image Processing Software
http://www.focus-em.org
GNU General Public License v2.0
35 stars 14 forks source link

Refine switch does not apply changes to the images #127

Closed rdrighetto closed 8 years ago

rdrighetto commented 8 years ago

Whenever I run the "Refine Switch" custom script, it does run performing the tests specified (e.g. change revhk), but in the end it gives the following error:

2dx_DetermineSwitch finished.

app_2dx_image: Undefined variable.

I circumvent the problem by adding the following line to the beginning of script ./merge/SCRATCH/2dx_execute_merge_results.script:

set app_2dx_image = which 2dx_image

and then I source it from csh.

Then the script is able to call 2dx_image and apply the changes found.

But I think this should be done automatically by default.

sthennin commented 8 years ago

I added the line set app_2dx_image = "" to all scripts in the top section. Will be submitted to GitHub later today.