The initialize script should be split to various scripts such as initialize_ccp4, initialize_eman2, initialize_frealign etc, otherwise the user keeps on getting these warnings that something is not installed even though it would not be used in the script.
The initialize script should be split to various scripts such as initialize_ccp4, initialize_eman2, initialize_frealign etc, otherwise the user keeps on getting these warnings that something is not installed even though it would not be used in the script.