search

LBEM-CH / focus

High Throughput Electron Microscopy Image Processing Software
http://www.focus-em.org
GNU General Public License v2.0
36 stars 14 forks source link

EPU options #201

Closed sthennin closed 6 years ago

sthennin commented 7 years ago

FOCUS should be able to manually define pixel size of the input image, instead of reading it from the MRC file header.

FOCUS should be able to import MRC files from several folders, because EPU creates one such folder for all movies recorded from a grid square.

FOCUS doesn't correctly compute the frame numbers and total frame dose, when working with a gain-corrected movie (Option 2).

sthennin commented 7 years ago

FOCUS aparently cannot import MRC files that are symbolic links to actual MRC files elsewhere.

FOCUS needs an option to either get the metadata (pixel size) from the MRC header, or from the manually defined values.

EPU writes out an XML file with metadata for each movie. FOCUS should be able to read that.

rdrighetto commented 7 years ago

The option to manually provide the pixel size is already implemented (see commit 550080a).

-- Ricardo Diogo Righetto

Em 1 de set de 2017 15:23, "sthennin" notifications@github.com escreveu:

FOCUS should be able to manually define pixel size of the input image, instead of reading it from the MRC file header.

FOCUS should be able to import MRC files from several folders, because EPU creates one such folder for all movies recorded from a grid square.

FOCUS doesn't correctly compute the frame numbers and total frame dose, when working with a gain-corrected movie (Option 2).

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/C-CINA/focus/issues/201, or mute the thread https://github.com/notifications/unsubscribe-auth/AHVvf7ox2txuuJsvyRhGlbXZtGmTMrihks5seAVGgaJpZM4PKJRg .