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LBEM-CH / focus

High Throughput Electron Microscopy Image Processing Software
http://www.focus-em.org
GNU General Public License v2.0
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gCTF script not creating log file #233

Closed hansenbry closed 6 years ago

hansenbry commented 6 years ago

When running gCTF (on average) I get the below error message on all my data. The ctf correction appears to have been done, but the ctfres value can't be populated. Any ideas on what I need to fix?

Processing done successfully. Average defocus = 1.976 microns CTF Figure of Merrit: 0.181696 fh = iter(open(fname, 'U')) IOError: [Errno 2] No such file or directory: 'movie_aligned_Sum_EPA.log' ############################process_ctf finished.############################# Traceback (most recent call last): File "/opt/rml/focus/scripts/proc/gctfres.py", line 11, in epa = np.loadtxt( epa_file, skiprows=1 ).astype( 'float32' ) File "/home/hansenbry/EMAN2/lib/python2.7/site-packages/numpy/lib/npyio.py", line 734, in loadtxt

hansenbry commented 6 years ago

Just checking in to see if there are any updates to this issue?

rdrighetto commented 6 years ago

Hi Bryan,

I was not able to reproduce this issue, which has been previously reported (see #206) . Most likely it's a Gctf version-related bug. We are using Gctf v1.06 with CUDA v8.0. Please also make sure you use the latest FOCUS release from our website.