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LBEM-CH / focus

High Throughput Electron Microscopy Image Processing Software
http://www.focus-em.org
GNU General Public License v2.0
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MacOS Mojave (10.14) - Library not loaded. #243

Open klhvorecny opened 5 years ago

klhvorecny commented 5 years ago

Hello,

I'm running MacOS Mojave (10.14.3) and I recently downloaded Focus (Version 1.1.0 for MacOS(10_12)). All goes well until I try to run "Init Files and Parameters" under 2DXtal. I then get a library error:

#############################2dx_initialize_files############################# ==== Sourcing 2dx_init_files_sub.com ==== ==== Pixel Size is 1.91. ==== ==== Testing if image_2dx.mrc exists ==== ==== Copying image_2dx_raw.mrc onto image_2dx.mrc ==== ==== image_2dx.mrc exists (1) ==== ==== Testing Endianess. ==== ########################2dx_initialize_files finished.######################## dyld: Library not loaded: /usr/lib/system/libsystem_coretls.dylib Referenced from: /Applications/focus/kernel/mrc/lib/usr/lib/libSystem.B.dylib Reason: image not found

Some googling and poking around in the file system show that the names and locations of the "lib" files have changed in MacOS(10.14). Looks like changes like this might have happened in the past and they were resolved (https://github.com/C-CINA/focus/issues/122). As an aside, I also can't make symbolic links in /usr/lib/ as a work around (the OS prevents this).

Any suggestions? Thanks in advance, Kelli

domenica-f commented 4 years ago

Dear Kelli, I am experiencing the same problem but with MacOS High Sierra. Did you find a solution yet?

Thank you, Domenica

klhvorecny commented 4 years ago

Hello Domenica,

No, unfortunately not. My work around was to have Focus installed on the Linux cluster that I have access to, which may not be super helpful advice for you. I wish I had more helpful info!

Best wishes, Kelli