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LCSB-BioCore / COBREXA.jl

Constraint-Based Reconstruction and EXascale Analysis
https://lcsb-biocore.github.io/COBREXA.jl/
Apache License 2.0
42 stars 8 forks source link

Add genes and gene reaction rules to `CoreModel` #439

Closed stelmo closed 2 years ago

stelmo commented 3 years ago

The only really important feature missing from CoreModels is genes and gene reaction rules. What is the most efficient way to add this information to the models and still have it be efficient?

exaexa commented 3 years ago

are there any MAT models around that contain the GRRs?

stelmo commented 3 years ago

Yep, all the mat models from the BiGG database, e.g. iML1515, iJR904, iAF1260, etc.

exaexa commented 2 years ago

Closing this (thanks @htpusa ) :tada: