LCSB-BioCore / COBREXA.jl

Constraint-Based Reconstruction and EXascale Analysis
https://lcsb-biocore.github.io/COBREXA.jl/
Apache License 2.0
42 stars 8 forks source link

Add some more semantics to EnzymeConstrainedModel #742

Closed stelmo closed 1 year ago

stelmo commented 1 year ago

Semantics are awesome ❤️

stelmo commented 1 year ago

/format

github-actions[bot] commented 1 year ago

:heavy_check_mark: Auto-formatting triggered by this comment succeeded, commited as a3bfd8f0d99d184bbf864ffac766628d6c962ebe

stelmo commented 1 year ago

/format

github-actions[bot] commented 1 year ago

:heavy_check_mark: Auto-formatting triggered by this comment succeeded, commited as 80eeeb80d359d44f44c6b3b40ff83b999dcf9617

stelmo commented 1 year ago

/format

github-actions[bot] commented 1 year ago

:heavy_check_mark: Auto-formatting triggered by this comment succeeded, commited as 79eb51adc8f91d0b6da4f119f8d4d922dd77556b

stelmo commented 1 year ago

/format

github-actions[bot] commented 1 year ago

:heavy_check_mark: Auto-formatting triggered by this comment succeeded, commited as 9d1cab03deeed46ebfcb3e64806e26d9503a39f8

stelmo commented 1 year ago

/format

github-actions[bot] commented 1 year ago

:heavy_check_mark: Auto-formatting triggered by this comment succeeded, commited as 2bc563c056359d8d5a8b201e50ad2fdb0e493b7a

stelmo commented 1 year ago

/format

github-actions[bot] commented 1 year ago

:sunny: Auto-formatting triggered by this comment succeeded, but the code was already formatted correctly.

stelmo commented 1 year ago

/format

github-actions[bot] commented 1 year ago

:heavy_check_mark: Auto-formatting triggered by this comment succeeded, commited as 2de37330ab720a51a17fd358414c82c827970a91

codecov[bot] commented 1 year ago

Codecov Report

Base: 88.28% // Head: 89.97% // Increases project coverage by +1.68% :tada:

Coverage data is based on head (8184111) compared to base (65f79be). Patch coverage: 95.23% of modified lines in pull request are covered.

:exclamation: Current head 8184111 differs from pull request most recent head b1c47d1. Consider uploading reports for the commit b1c47d1 to get more accurate results

Additional details and impacted files ```diff @@ Coverage Diff @@ ## next #742 +/- ## ========================================== + Coverage 88.28% 89.97% +1.68% ========================================== Files 85 85 Lines 2075 2064 -11 ========================================== + Hits 1832 1857 +25 + Misses 243 207 -36 ``` | [Impacted Files](https://codecov.io/gh/LCSB-BioCore/COBREXA.jl/pull/742?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore) | Coverage Δ | | |---|---|---| | [src/analysis/flux\_balance\_analysis.jl](https://codecov.io/gh/LCSB-BioCore/COBREXA.jl/pull/742?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore#diff-c3JjL2FuYWx5c2lzL2ZsdXhfYmFsYW5jZV9hbmFseXNpcy5qbA==) | `100.00% <ø> (ø)` | | | [src/analysis/parsimonious\_flux\_balance\_analysis.jl](https://codecov.io/gh/LCSB-BioCore/COBREXA.jl/pull/742?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore#diff-c3JjL2FuYWx5c2lzL3BhcnNpbW9uaW91c19mbHV4X2JhbGFuY2VfYW5hbHlzaXMuamw=) | `77.27% <ø> (ø)` | | | [src/types/accessors/AbstractMetabolicModel.jl](https://codecov.io/gh/LCSB-BioCore/COBREXA.jl/pull/742?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore#diff-c3JjL3R5cGVzL2FjY2Vzc29ycy9BYnN0cmFjdE1ldGFib2xpY01vZGVsLmps) | `78.33% <ø> (ø)` | | | [src/utils/BalancedGrowthCommunityModel.jl](https://codecov.io/gh/LCSB-BioCore/COBREXA.jl/pull/742?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore#diff-c3JjL3V0aWxzL0JhbGFuY2VkR3Jvd3RoQ29tbXVuaXR5TW9kZWwuamw=) | `0.00% <ø> (ø)` | | | [src/utils/enzyme\_constrained.jl](https://codecov.io/gh/LCSB-BioCore/COBREXA.jl/pull/742?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore#diff-c3JjL3V0aWxzL2VuenltZV9jb25zdHJhaW5lZC5qbA==) | `0.00% <ø> (-25.00%)` | :arrow_down: | | [src/utils/flux\_summary.jl](https://codecov.io/gh/LCSB-BioCore/COBREXA.jl/pull/742?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore#diff-c3JjL3V0aWxzL2ZsdXhfc3VtbWFyeS5qbA==) | `97.29% <ø> (ø)` | | | [src/types/accessors/bits/semantics.jl](https://codecov.io/gh/LCSB-BioCore/COBREXA.jl/pull/742?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore#diff-c3JjL3R5cGVzL2FjY2Vzc29ycy9iaXRzL3NlbWFudGljcy5qbA==) | `61.22% <50.00%> (+8.16%)` | :arrow_up: | | [src/analysis/variability\_analysis.jl](https://codecov.io/gh/LCSB-BioCore/COBREXA.jl/pull/742?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore#diff-c3JjL2FuYWx5c2lzL3ZhcmlhYmlsaXR5X2FuYWx5c2lzLmps) | `94.59% <100.00%> (ø)` | | | [src/solver.jl](https://codecov.io/gh/LCSB-BioCore/COBREXA.jl/pull/742?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore#diff-c3JjL3NvbHZlci5qbA==) | `97.61% <100.00%> (+0.84%)` | :arrow_up: | | [src/types/wrappers/EnzymeConstrainedModel.jl](https://codecov.io/gh/LCSB-BioCore/COBREXA.jl/pull/742?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore#diff-c3JjL3R5cGVzL3dyYXBwZXJzL0VuenltZUNvbnN0cmFpbmVkTW9kZWwuamw=) | `95.12% <100.00%> (+3.23%)` | :arrow_up: | | ... and [6 more](https://codecov.io/gh/LCSB-BioCore/COBREXA.jl/pull/742?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore) | | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore)

:umbrella: View full report at Codecov.
:loudspeaker: Do you have feedback about the report comment? Let us know in this issue.