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LCSB-BioCore / COBREXA.jl

Constraint-Based Reconstruction and EXascale Analysis
http://bit.ly/COBREXA
Apache License 2.0
42 stars 8 forks source link

implement expression-limited fluxes (E-Flux like algorihm) #777

Closed exaexa closed 1 year ago

exaexa commented 1 year ago

Closes #552

I'll make a separate port to the 2.0 branch later.

exaexa commented 1 year ago

PS let this be the final feature of the 1.x branch. I'll release 1.5, the rest of the 1.5 milestone will be applied as bugfixes to 1.5.x or better to 2.x directly.

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 100.00% and project coverage change: +0.05 :tada:

Comparison is base (28ddfbd) 91.34% compared to head (eed8be5) 91.39%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## master #777 +/- ## ========================================== + Coverage 91.34% 91.39% +0.05% ========================================== Files 82 86 +4 Lines 2196 2209 +13 ========================================== + Hits 2006 2019 +13 Misses 190 190 ``` | [Impacted Files](https://app.codecov.io/gh/LCSB-BioCore/COBREXA.jl/pull/777?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore) | Coverage Δ | | |---|---|---| | [src/analysis/expressions.jl](https://app.codecov.io/gh/LCSB-BioCore/COBREXA.jl/pull/777?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore#diff-c3JjL2FuYWx5c2lzL2V4cHJlc3Npb25zLmps) | `100.00% <100.00%> (ø)` | | | [src/base/types/wrappers/ExpressionLimitedModel.jl](https://app.codecov.io/gh/LCSB-BioCore/COBREXA.jl/pull/777?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore#diff-c3JjL2Jhc2UvdHlwZXMvd3JhcHBlcnMvRXhwcmVzc2lvbkxpbWl0ZWRNb2RlbC5qbA==) | `100.00% <100.00%> (ø)` | | | [src/base/utils/eflux.jl](https://app.codecov.io/gh/LCSB-BioCore/COBREXA.jl/pull/777?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore#diff-c3JjL2Jhc2UvdXRpbHMvZWZsdXguamw=) | `100.00% <100.00%> (ø)` | | | [src/reconstruction/expresisons.jl](https://app.codecov.io/gh/LCSB-BioCore/COBREXA.jl/pull/777?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=LCSB-BioCore#diff-c3JjL3JlY29uc3RydWN0aW9uL2V4cHJlc2lzb25zLmps) | `100.00% <100.00%> (ø)` | |

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