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LCSB-BioCore / COBREXA.jl

Constraint-Based Reconstruction and EXascale Analysis
http://bit.ly/COBREXA
Apache License 2.0
42 stars 8 forks source link

Implement quadratic functionality #802

Closed stelmo closed 7 months ago

exaexa commented 7 months ago

/format

github-actions[bot] commented 7 months ago

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exaexa commented 7 months ago

@stelmo if you could have a quick look now it would be great. I've set up proper intermediate (CT-based) functions for FBA/pFBA; same will follow with MOMA and FVA and likely later for others. These will also be used exclusively for the complex models.

I split off the MOMA from QP tutorial. To be more realistic I assume we generally want to run pFBA instead of plain FBA to obtain a sane initial "reference" solution, right?

stelmo commented 7 months ago

@stelmo if you could have a quick look now it would be great. I've set up proper intermediate (CT-based) functions for FBA/pFBA; same will follow with MOMA and FVA and likely later for others. These will also be used exclusively for the complex models.

I split off the MOMA from QP tutorial. To be more realistic I assume we generally want to run pFBA instead of plain FBA to obtain a sane initial "reference" solution, right?

Yep, it would make sense to use a pFBA solution for MOMA, but as long as its general i.e. the user can decide how sane they want to be, I don't mind

exaexa commented 7 months ago

Yep, it would make sense to use a pFBA solution for MOMA, but as long as its general i.e. the user can decide how sane they want to be, I don't mind

I converted this to an admonition opportunity.