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LHNCBC / metamaplite

A near real-time named-entity recognizer
https://metamap.nlm.nih.gov/MetaMapLite.shtml
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public_mm_lite directory not found #31

Open DSLituiev opened 1 year ago

DSLituiev commented 1 year ago

I am trying to use the package as a standalone command line tool thus I may be missing some Java project magic. How is it supposed to be created?

DSLituiev commented 1 year ago

I am following instructions here https://github.com/lhncbc/metamaplite#using-maven

willjrogers commented 1 year ago

The command line version can be generated using:

$ mvn package

See the bash script: metamaplite.sh, Also, there is a script metamaplite.bat which I believe is out of date (I don’t have access to a Windows machine at the moment to test it.)

If you don’t want to use the script, you can also invoke it from the command line:

$ java -cp target/ gov.nih.nlm.nls.ner.MetaMapLite

For example:

$ java -cp target/metamaplite-3.6.2rc8-standalone.jar gov.nih.nlm.nls.ner.MetaMapLite

-- Willie Rogers, Contractor, Lister Hill Center, National Library of Medicine, NIH Rogers, Willie (NIH/NLM/LHC) [C] email: @.**@.>

From: Dmytro Lituiev @.> Date: Sunday, May 14, 2023 at 11:50 PM To: lhncbc/metamaplite @.> Cc: Subscribed @.***> Subject: [EXTERNAL] [lhncbc/metamaplite] public_mm_lite not found (Issue #31)

I am trying to use the package as a standalone command line tool thus I may be missing some Java project magic. How is it supposed to be created?

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