Updating UIMA, mapdb, and jackson-dataformat-yaml to latest versions

LHNCBC / metamaplite

A near real-time named-entity recognizer

https://metamap.nlm.nih.gov/MetaMapLite.shtml

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Updating UIMA, mapdb, and jackson-dataformat-yaml to latest versions #38

Closed stevenbedrick closed 6 months ago

stevenbedrick commented 6 months ago

These three libraries were a bit of date, and each had security-related fixes that seemed worth integrating.

As far as I can tell, this didn't break anything (mvn test is coming back clean). However, note that UIMA 3.5 requires Java 17, and I have a fuzzy recollection that MML is still stuck on Java 8. If that's the case, let's discuss!

willjrogers commented 6 months ago

The program compiles and runs on Java 11 with the pom.xml modifications .