Open Jemimacat opened 7 years ago
Hi there,
Thanks for your interested in our HLA pipeline. We have developed the V2.0 of the HLATyphon that has the standalone mode on desktop / laptop, and offers a better way to deal with IMGT database. It will upload it to github soon. I will keep you posted.
Best,
Alex
hi, @BerylChrysolite
Where is V2.0?
I am very interested for that!
Hi. In the config.INI file, there are the following lines:
`[cDNAReferenceDatabase] bw2_index_dir = /Bioinformatics/IMGT.Release.3.12.0 ExonBoundary = /Bioinformatics/IMGT.Release.3.12.0/ExonBoundary_Exon2
[EnvironmentPath] data_dir = /Bioinformatics/105_Validation_Samples/data proj_dir = /Bioinformatics/105_Validation_Samples scproj_dir = /scratch`
I can not find such directories. Should I download the IMGT database by myself? Or where I could download these? Thank you.