LJI-Bioinformatics / HLATyphon

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Can not find these directories. Should I download and create such directories? #3

Open Jemimacat opened 7 years ago

Jemimacat commented 7 years ago

Hi. In the config.INI file, there are the following lines:

`[cDNAReferenceDatabase] bw2_index_dir = /Bioinformatics/IMGT.Release.3.12.0 ExonBoundary = /Bioinformatics/IMGT.Release.3.12.0/ExonBoundary_Exon2

[EnvironmentPath] data_dir = /Bioinformatics/105_Validation_Samples/data proj_dir = /Bioinformatics/105_Validation_Samples scproj_dir = /scratch`

I can not find such directories. Should I download the IMGT database by myself? Or where I could download these? Thank you.

BerylChrysolite commented 7 years ago

Hi there,

Thanks for your interested in our HLA pipeline. We have developed the V2.0 of the HLATyphon that has the standalone mode on desktop / laptop, and offers a better way to deal with IMGT database. It will upload it to github soon. I will keep you posted.

Best,

Alex

yubau1112 commented 5 years ago

hi, @BerylChrysolite
Where is V2.0?

I am very interested for that!