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LKremer
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scbs
Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSCAn
https://anders-biostat.github.io/MethSCAn/
GNU General Public License v3.0
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code for downstream analysis of the VMR matrix
#21
JiayiLi21
opened
1 month ago
1
Sparse output
#19
LKremer
closed
10 months ago
0
allow `scbs filter` to overwrite the input directory
#18
LKremer
closed
1 month ago
1
add more VMR info to the scbs scan output
#17
LKremer
closed
1 year ago
1
scbs filter should preserve the run_info log file
#16
LKremer
closed
1 year ago
0
add more DMR information to the scbs diff output
#15
LKremer
closed
1 year ago
0
Add support for biscuit .bed output
#14
valentinwust
closed
1 year ago
1
fix find_peaks and add tests for DMR detection
#13
LKremer
closed
1 year ago
0
Re-implement scbs matrix #7
#12
LKremer
closed
2 years ago
0
Differential methylation
#11
martinabraun
closed
2 years ago
0
feature request: merging files for memory issues?
#10
chooliu
closed
1 year ago
9
make "scbs filter" crash when you filter all cells
#9
LKremer
closed
2 years ago
0
custom format specification
#8
simon-anders
closed
2 years ago
2
scbs matrix: Allow user to choose between long or wide matrix format
#7
LKremer
closed
2 years ago
1
Add a method to allow for easy cell filtering (e.g. after QC)
#6
LKremer
closed
2 years ago
2
pandas is faster than loadtxt
#5
alexey0308
closed
2 years ago
2
[WIP] Hdf5 io
#4
alexey0308
opened
3 years ago
0
Coverage class
#3
alexey0308
closed
3 years ago
1
Use CSC format rather than CSR
#2
alexey0308
closed
3 years ago
8
Split big file into several stage-files
#1
alexey0308
closed
3 years ago
3